Variant report

Variant	rs4873115
Chromosome Location	chr8:50729832-50729833
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13281608	0.83[AFR][1000 genomes]
rs1486255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2171191	0.80[AFR][1000 genomes]
rs4873381	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50727200-50732600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:50728400-50730000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:50728400-50730000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:50728400-50730200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:50728400-50731200	Enhancers	HMEC	breast
6	chr8:50728600-50731000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:50728600-50731000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:50728600-50731400	Enhancers	Hela-S3	cervix
9	chr8:50728600-50731400	Enhancers	NHDF-Ad	bronchial
10	chr8:50728800-50730000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:50729000-50730000	Enhancers	NH-A	brain
12	chr8:50729200-50730000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:50729400-50730200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:50729400-50731000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:50729400-50731000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:50729800-50730600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:50729800-50730600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr8:50729800-50730800	Weak transcription	NHEK	skin
19	chr8:50729800-50732200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:50729800-50734600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:50729800-50735200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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