Variant report

Variant	rs2385549
Chromosome Location	chr8:50784484-50784485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10092529	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12679231	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13254104	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1385973	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1385978	0.87[AMR][1000 genomes]
rs1486244	0.91[AFR][1000 genomes]
rs1486246	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1486248	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1486249	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1552374	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1906016	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2129163	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2385550	0.95[AFR][1000 genomes]
rs2385551	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2385606	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4276702	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4437664	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4873389	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7461601	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7812500	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7812505	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7816366	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7819106	0.87[AMR][1000 genomes]
rs7841672	0.88[AFR][1000 genomes]
rs973721	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50783600-50786200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:50783600-50787000	Weak transcription	NH-A	brain
3	chr8:50783800-50785200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:50783800-50786000	Weak transcription	NHDF-Ad	bronchial
5	chr8:50783800-50786800	Weak transcription	HMEC	breast
6	chr8:50783800-50787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:50784400-50785000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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