Variant report

Variant	rs7841672
Chromosome Location	chr8:50771147-50771148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10092529	0.83[AFR][1000 genomes]
rs12679231	0.84[AFR][1000 genomes]
rs13254104	0.90[AFR][1000 genomes]
rs1385973	0.83[AFR][1000 genomes]
rs1385977	0.81[AFR][1000 genomes]
rs1385978	0.82[AFR][1000 genomes]
rs1486244	0.93[AFR][1000 genomes]
rs1486246	0.93[AFR][1000 genomes]
rs1486248	0.83[AFR][1000 genomes]
rs1486249	0.93[AFR][1000 genomes]
rs1906016	0.95[AFR][1000 genomes]
rs2129163	0.90[AFR][1000 genomes]
rs2385549	0.88[AFR][1000 genomes]
rs2385550	0.91[AFR][1000 genomes]
rs2385551	0.90[AFR][1000 genomes]
rs2385606	0.83[AFR][1000 genomes]
rs4276702	0.90[AFR][1000 genomes]
rs4437664	0.90[AFR][1000 genomes]
rs4873389	0.93[AFR][1000 genomes]
rs7461601	0.84[AFR][1000 genomes]
rs7812500	0.88[AFR][1000 genomes]
rs7812505	0.87[AFR][1000 genomes]
rs7816366	0.92[AFR][1000 genomes]
rs973721	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50767000-50772800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50770000-50773000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:50771000-50771200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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