Variant report

Variant	rs66647778
Chromosome Location	chr8:50692033-50692034
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12542687	0.81[EUR][1000 genomes]
rs12550124	0.83[EUR][1000 genomes]
rs4389954	0.83[EUR][1000 genomes]
rs4392911	1.00[ASN][1000 genomes]
rs4457345	0.83[EUR][1000 genomes]
rs4507777	0.83[EUR][1000 genomes]
rs4873379	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7463456	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7831807	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7834858	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50692000-50692600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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