Variant report

Variant	rs7826013
Chromosome Location	chr8:50709625-50709626
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50709168..50710848-chr8:50931158..50933465,2	MCF-7	breast:
2	chr8:50707630..50710202-chr8:50714425..50717353,3	MCF-7	breast:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10086004	0.97[ASN][1000 genomes]
rs10089399	0.97[ASN][1000 genomes]
rs10090657	0.97[ASN][1000 genomes]
rs10092384	0.97[ASN][1000 genomes]
rs10107423	0.97[ASN][1000 genomes]
rs10111730	0.97[ASN][1000 genomes]
rs1038534	0.97[ASN][1000 genomes]
rs1074385	0.97[ASN][1000 genomes]
rs10957620	0.97[ASN][1000 genomes]
rs10957679	0.85[ASN][1000 genomes]
rs10957682	0.85[ASN][1000 genomes]
rs11785147	0.97[ASN][1000 genomes]
rs11786939	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11787050	0.85[ASN][1000 genomes]
rs12542041	0.94[ASN][1000 genomes]
rs12542687	0.82[ASN][1000 genomes]
rs12545695	0.81[ASN][1000 genomes]
rs12547245	0.94[ASN][1000 genomes]
rs12677051	0.97[ASN][1000 genomes]
rs13251355	0.97[ASN][1000 genomes]
rs13255117	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13261298	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13267366	0.97[ASN][1000 genomes]
rs1352112	0.97[ASN][1000 genomes]
rs1352113	0.86[ASN][1000 genomes]
rs1385974	0.97[ASN][1000 genomes]
rs1385975	0.97[ASN][1000 genomes]
rs1385976	0.85[ASN][1000 genomes]
rs1385980	0.82[ASN][1000 genomes]
rs1385982	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1486241	0.97[ASN][1000 genomes]
rs1486242	0.97[ASN][1000 genomes]
rs1486243	0.97[ASN][1000 genomes]
rs1486251	0.97[ASN][1000 genomes]
rs1486252	0.97[ASN][1000 genomes]
rs1486253	0.97[ASN][1000 genomes]
rs1486254	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1552371	0.84[ASN][1000 genomes]
rs1552372	0.97[ASN][1000 genomes]
rs1552373	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1552375	0.95[ASN][1000 genomes]
rs1552377	0.94[ASN][1000 genomes]
rs1552378	0.81[ASN][1000 genomes]
rs1552379	0.81[ASN][1000 genomes]
rs1580468	0.97[ASN][1000 genomes]
rs1586364	0.85[ASN][1000 genomes]
rs1601569	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16912794	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16913087	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16913172	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16913461	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16913472	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16913475	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16913687	0.85[ASN][1000 genomes]
rs1906014	0.81[ASN][1000 genomes]
rs1906015	0.91[ASN][1000 genomes]
rs1979535	0.97[ASN][1000 genomes]
rs1994344	0.97[ASN][1000 genomes]
rs2129162	0.97[ASN][1000 genomes]
rs2129164	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2129165	0.93[ASN][1000 genomes]
rs2247368	0.81[ASN][1000 genomes]
rs2385545	0.97[ASN][1000 genomes]
rs2385546	0.97[ASN][1000 genomes]
rs2385547	0.97[ASN][1000 genomes]
rs2385548	0.85[ASN][1000 genomes]
rs2449960	0.81[ASN][1000 genomes]
rs318850	0.81[ASN][1000 genomes]
rs4339657	0.95[ASN][1000 genomes]
rs4383988	0.97[ASN][1000 genomes]
rs4584153	0.97[ASN][1000 genomes]
rs4873113	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873114	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873116	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873118	0.85[ASN][1000 genomes]
rs4873119	0.85[ASN][1000 genomes]
rs4873379	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4873382	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873383	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873388	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873391	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873392	0.85[ASN][1000 genomes]
rs55636909	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55879210	0.85[ASN][1000 genomes]
rs56659775	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57462717	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58764084	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59379959	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59848488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60213702	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60631955	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61662535	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6472721	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988440	0.83[ASN][1000 genomes]
rs6994224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7008449	0.81[ASN][1000 genomes]
rs7008924	0.95[ASN][1000 genomes]
rs7013903	0.97[ASN][1000 genomes]
rs73582706	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73582713	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73582718	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73582724	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73582755	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73582756	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73676017	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73676077	0.81[ASN][1000 genomes]
rs7388392	0.94[ASN][1000 genomes]
rs7463456	0.84[AFR][1000 genomes]
rs7825552	0.97[ASN][1000 genomes]
rs7828311	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7831807	0.85[AFR][1000 genomes]
rs7834858	0.93[AMR][1000 genomes]
rs9298228	0.97[ASN][1000 genomes]
rs9298229	0.97[ASN][1000 genomes]
rs964011	0.97[ASN][1000 genomes]
rs967107	0.81[ASN][1000 genomes]
rs974740	0.85[ASN][1000 genomes]
rs974742	0.85[ASN][1000 genomes]
rs9886451	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50693200-50719600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:50706800-50724000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:50707400-50711000	Enhancers	HMEC	breast
4	chr8:50707800-50712800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:50708000-50711000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:50708200-50710400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:50708200-50710800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:50708600-50717000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:50708800-50710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:50708800-50710800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:50709000-50710000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:50709000-50712800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr8:50709200-50710200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:50709600-50711400	Enhancers	Brain Germinal Matrix	brain
15	chr8:50709600-50712400	Weak transcription	Hela-S3	cervix

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