Variant report

Variant	rs10957710
Chromosome Location	chr8:50871784-50871785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:50861606..50863840-chr8:50871624..50874600,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10112215	0.82[JPT][hapmap]
rs10112818	0.82[JPT][hapmap]
rs10435582	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10957737	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10957742	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11783503	0.82[JPT][hapmap]
rs11783631	0.82[JPT][hapmap]
rs12541599	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13255224	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13266009	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1344326	0.82[JPT][hapmap]
rs1484806	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1486256	1.00[CEU][hapmap]
rs1552316	1.00[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1552380	0.92[CHB][hapmap]
rs1601298	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1973259	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2015043	0.82[JPT][hapmap]
rs2035528	0.88[CEU][hapmap]
rs2054743	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs2385699	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4144735	1.00[CEU][hapmap]
rs7010915	0.82[JPT][hapmap]
rs7014520	0.82[JPT][hapmap]
rs931293	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643689	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs971926	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1022115	chr8:50864995-50981944	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv611311	chr8:50865230-50980320	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50855200-50875200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:50860400-50875400	Weak transcription	Fetal Intestine Small	intestine
3	chr8:50868400-50873200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:50868600-50872600	Weak transcription	Brain Germinal Matrix	brain
5	chr8:50869800-50875000	Weak transcription	Fetal Brain Male	brain
6	chr8:50870200-50875400	Weak transcription	Fetal Lung	lung
7	chr8:50870400-50875400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:50870400-50875600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:50871000-50874600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:50871600-50872200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links