Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10112818	0.83[CHB][hapmap];0.93[CHD][hapmap];0.90[MEX][hapmap]
rs10216383	0.83[ASN][1000 genomes]
rs11786785	0.84[ASN][1000 genomes]
rs12543434	1.00[YRI][hapmap]
rs13266009	0.83[CHB][hapmap];0.84[MEX][hapmap]
rs13271446	1.00[YRI][hapmap]
rs1484806	0.84[MEX][hapmap]
rs1486247	1.00[YRI][hapmap]
rs1552316	0.83[MEX][hapmap]
rs1552380	0.91[CHB][hapmap]
rs17676077	0.95[ASN][1000 genomes]
rs2054743	0.84[MEX][hapmap]
rs2170953	0.80[CHD][hapmap]
rs2385548	0.81[ASN][1000 genomes]
rs2385699	0.84[MEX][hapmap]
rs318851	0.80[CHD][hapmap]
rs318853	0.80[CHD][hapmap]
rs36160411	0.94[ASN][1000 genomes]
rs62503966	0.83[ASN][1000 genomes]
rs6991925	1.00[CHB][hapmap]
rs7388394	0.83[ASN][1000 genomes]
rs9643689	0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17676043	SNTG1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50783600-50787000	Weak transcription	NH-A	brain
2	chr8:50783800-50786800	Weak transcription	HMEC	breast
3	chr8:50783800-50787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:50785000-50787000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:50785200-50787800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:50785400-50787600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:50786200-50786400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:50786200-50786600	Weak transcription	NHDF-Ad	bronchial

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