Variant report
Variant | rs10957890 |
---|---|
Chromosome Location | chr8:79332176-79332177 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10957889 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11775617 | 0.84[EUR][1000 genomes] |
rs11776326 | 0.86[EUR][1000 genomes] |
rs11782530 | 0.82[EUR][1000 genomes] |
rs11997760 | 0.85[EUR][1000 genomes] |
rs11997999 | 0.85[EUR][1000 genomes] |
rs12679807 | 0.86[EUR][1000 genomes] |
rs13248210 | 0.82[EUR][1000 genomes] |
rs13257652 | 0.82[EUR][1000 genomes] |
rs13262571 | 0.85[EUR][1000 genomes] |
rs13267958 | 0.85[EUR][1000 genomes] |
rs13267990 | 0.85[EUR][1000 genomes] |
rs13268612 | 0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13269738 | 0.86[EUR][1000 genomes] |
rs13271734 | 0.85[EUR][1000 genomes] |
rs13273641 | 0.87[EUR][1000 genomes] |
rs13274037 | 0.84[EUR][1000 genomes] |
rs13274739 | 0.85[EUR][1000 genomes] |
rs13275132 | 0.86[EUR][1000 genomes] |
rs13277595 | 0.92[TSI][hapmap] |
rs13278555 | 0.85[EUR][1000 genomes] |
rs4413764 | 0.85[EUR][1000 genomes] |
rs4527861 | 0.86[EUR][1000 genomes] |
rs62519510 | 0.85[EUR][1000 genomes] |
rs6473098 | 0.85[EUR][1000 genomes] |
rs6473099 | 0.85[EUR][1000 genomes] |
rs6473100 | 0.85[EUR][1000 genomes] |
rs6473101 | 0.84[EUR][1000 genomes] |
rs6473102 | 1.00[ASN][1000 genomes] |
rs6995111 | 0.85[EUR][1000 genomes] |
rs6996260 | 0.86[EUR][1000 genomes] |
rs6997037 | 0.87[EUR][1000 genomes] |
rs7012638 | 0.85[EUR][1000 genomes] |
rs7013188 | 0.85[EUR][1000 genomes] |
rs7013333 | 0.85[EUR][1000 genomes] |
rs7016593 | 0.86[EUR][1000 genomes] |
rs7018296 | 0.85[EUR][1000 genomes] |
rs7827766 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7830219 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7831788 | 0.85[EUR][1000 genomes] |
rs7844386 | 0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv891056 | chr8:79206819-79394667 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1017218 | chr8:79287819-79434844 | Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv539652 | chr8:79287819-79434844 | Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1033453 | chr8:79320533-79485680 | Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:79331800-79332200 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
2 | chr8:79331800-79332200 | Enhancers | Primary T helper cells PMA-I stimulated | -- |