Variant report

Variant	rs7827766
Chromosome Location	chr8:79306178-79306179
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:79305893..79307637-chr8:79308532..79312236,3	MCF-7	breast:
2	chr8:79305220..79306244-chr8:79343794..79344725,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252935	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1017340	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1017341	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10957889	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10957890	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11775617	0.85[EUR][1000 genomes]
rs11776326	0.87[EUR][1000 genomes]
rs11778429	0.81[EUR][1000 genomes]
rs11989254	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11997760	0.88[EUR][1000 genomes]
rs11997999	0.88[EUR][1000 genomes]
rs12679807	0.85[EUR][1000 genomes]
rs13262571	0.88[EUR][1000 genomes]
rs13267958	0.88[EUR][1000 genomes]
rs13267990	0.88[EUR][1000 genomes]
rs13268612	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13269738	0.87[EUR][1000 genomes]
rs13271734	0.84[EUR][1000 genomes]
rs13273641	0.86[EUR][1000 genomes]
rs13274037	0.87[EUR][1000 genomes]
rs13274739	0.88[EUR][1000 genomes]
rs13275132	0.87[EUR][1000 genomes]
rs13278555	0.88[EUR][1000 genomes]
rs4413764	0.87[EUR][1000 genomes]
rs4527861	0.86[EUR][1000 genomes]
rs62519510	0.88[EUR][1000 genomes]
rs6473097	0.82[EUR][1000 genomes]
rs6473098	0.88[EUR][1000 genomes]
rs6473099	0.87[EUR][1000 genomes]
rs6473100	0.87[EUR][1000 genomes]
rs6473101	0.87[EUR][1000 genomes]
rs6473102	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6995111	0.88[EUR][1000 genomes]
rs6996260	0.86[EUR][1000 genomes]
rs6997037	0.86[EUR][1000 genomes]
rs7012638	0.88[EUR][1000 genomes]
rs7013188	0.88[EUR][1000 genomes]
rs7013333	0.87[EUR][1000 genomes]
rs7016593	0.86[EUR][1000 genomes]
rs7018296	0.88[EUR][1000 genomes]
rs7821245	0.81[EUR][1000 genomes]
rs7830219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7831707	0.82[EUR][1000 genomes]
rs7831788	0.88[EUR][1000 genomes]
rs7833714	0.82[EUR][1000 genomes]
rs7844386	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891056	chr8:79206819-79394667	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1017218	chr8:79287819-79434844	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539652	chr8:79287819-79434844	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links