Variant report

Variant	rs10958305
Chromosome Location	chr8:52819024-52819025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:52810071..52814912-chr8:52818559..52824033,9	MCF-7	breast:
2	chr8:52814869..52817627-chr8:52818726..52822449,3	MCF-7	breast:
3	chr8:52816572..52819580-chr8:52820038..52823147,3	K562	blood:
4	chr8:52818679..52820310-chr8:52823249..52826137,2	K562	blood:

Variant related genes	Relation type
ENSG00000168300	Chromatin interaction
ENSG00000228801	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10087958	0.82[JPT][hapmap]
rs10101163	0.85[EUR][1000 genomes]
rs10504130	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs10958300	0.96[ASN][1000 genomes]
rs10958301	0.96[ASN][1000 genomes]
rs10958304	0.84[EUR][1000 genomes]
rs11775587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777016	0.96[ASN][1000 genomes]
rs11777714	0.96[ASN][1000 genomes]
rs11778849	0.94[ASN][1000 genomes]
rs11780040	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11781330	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs11784869	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785805	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787229	0.90[ASN][1000 genomes]
rs11787499	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs12675786	0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs12675907	0.82[ASN][1000 genomes]
rs12676345	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12676780	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12676835	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677407	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678639	1.00[ASN][1000 genomes]
rs12679287	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679983	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12680128	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12681203	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681734	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13265006	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13274159	0.81[AMR][1000 genomes]
rs13275967	0.81[AMR][1000 genomes]
rs13276400	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16916820	0.94[ASN][1000 genomes]
rs16916856	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16916865	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs16916906	0.96[ASN][1000 genomes]
rs16916952	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs16916961	1.00[ASN][1000 genomes]
rs17212214	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17212256	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17284746	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037138	0.94[ASN][1000 genomes]
rs2037139	0.96[ASN][1000 genomes]
rs2069119	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2176120	0.96[ASN][1000 genomes]
rs34004633	0.81[AMR][1000 genomes]
rs34058697	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34073804	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34213209	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34319820	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34364864	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34372756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34677273	1.00[ASN][1000 genomes]
rs34780436	0.81[AMR][1000 genomes]
rs34973406	0.94[ASN][1000 genomes]
rs35032384	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35509250	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35603537	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs41453644	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs4242479	0.85[EUR][1000 genomes]
rs4292674	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4321994	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4436115	0.81[AMR][1000 genomes]
rs4534123	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4573262	0.81[AMR][1000 genomes]
rs4598243	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4626585	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57212480	0.94[ASN][1000 genomes]
rs58561048	0.94[ASN][1000 genomes]
rs58583070	0.84[ASN][1000 genomes]
rs59602923	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60153173	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60304457	1.00[ASN][1000 genomes]
rs60796336	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61326367	0.84[ASN][1000 genomes]
rs6768	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6994203	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs71513549	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs71513552	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs71513561	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71513564	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs763550	0.94[ASN][1000 genomes]
rs9650179	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650180	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650305	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792352	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv3443379	chr8:52818749-52820797	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52812800-52822200	Weak transcription	Esophagus	oesophagus
2	chr8:52812800-52827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:52812800-52833400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:52813200-52822200	Weak transcription	Aorta	Aorta
5	chr8:52813200-52831000	Weak transcription	Right Ventricle	heart
6	chr8:52813200-52833200	Weak transcription	Brain Angular Gyrus	brain
7	chr8:52813400-52826800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr8:52813400-52827000	Weak transcription	Fetal Intestine Large	intestine
9	chr8:52813400-52829000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:52813400-52829200	Weak transcription	Brain Anterior Caudate	brain
11	chr8:52813400-52837200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr8:52813600-52837400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:52813800-52831600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:52813800-52831600	Weak transcription	Fetal Stomach	stomach
15	chr8:52813800-52833200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:52813800-52835800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:52813800-52837400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:52814000-52833200	Weak transcription	Fetal Lung	lung
19	chr8:52814000-52833600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:52814000-52836200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:52814000-52837400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:52814000-52839200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:52814200-52821200	Weak transcription	Thymus	Thymus
24	chr8:52814200-52842000	Weak transcription	Brain Substantia Nigra	brain
25	chr8:52814200-52850000	Weak transcription	Spleen	Spleen
26	chr8:52814800-52821800	Weak transcription	Fetal Intestine Small	intestine
27	chr8:52814800-52829600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:52814800-52834200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr8:52814800-52834600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr8:52814800-52837200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr8:52815000-52852000	Weak transcription	Colon Smooth Muscle	Colon
32	chr8:52815200-52821400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:52815200-52823600	Weak transcription	Adipose Nuclei	Adipose
34	chr8:52815200-52827200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr8:52815200-52828400	Weak transcription	Dnd41	blood
36	chr8:52815200-52833000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr8:52815200-52837400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:52815400-52822000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr8:52816000-52819600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr8:52816200-52820800	Weak transcription	GM12878-XiMat	blood
41	chr8:52816200-52822000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr8:52816200-52822000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr8:52816200-52822200	Weak transcription	Primary B cells from cord blood	blood
44	chr8:52816200-52831000	Weak transcription	Primary T cells from cord blood	blood
45	chr8:52816400-52823200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:52817000-52821200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr8:52817000-52821400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr8:52817200-52822200	Weak transcription	Fetal Muscle Leg	muscle
49	chr8:52817200-52827800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:52817200-52830800	Weak transcription	Left Ventricle	heart

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