Variant report

Variant	rs71513549
Chromosome Location	chr8:52682886-52682887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:52682656..52685622-chr8:52689821..52692010,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10504130	0.88[ASN][1000 genomes]
rs10958300	0.86[ASN][1000 genomes]
rs10958301	0.86[ASN][1000 genomes]
rs10958305	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11775587	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11775611	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11777016	0.86[ASN][1000 genomes]
rs11777714	0.86[ASN][1000 genomes]
rs11778849	0.88[ASN][1000 genomes]
rs11780040	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11780891	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11781330	0.88[ASN][1000 genomes]
rs11784869	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11785467	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11785805	0.83[ASN][1000 genomes]
rs11786167	0.81[ASN][1000 genomes]
rs12675786	0.88[ASN][1000 genomes]
rs12675907	0.99[ASN][1000 genomes]
rs12676345	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12676780	0.82[ASN][1000 genomes]
rs12676835	0.83[ASN][1000 genomes]
rs12677407	0.83[ASN][1000 genomes]
rs12678639	0.83[ASN][1000 genomes]
rs12678646	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12679287	0.83[ASN][1000 genomes]
rs12679983	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12680128	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681203	0.83[ASN][1000 genomes]
rs12681734	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13265006	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13274159	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13275967	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13276400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16916820	0.88[ASN][1000 genomes]
rs16916856	0.88[ASN][1000 genomes]
rs16916865	0.88[ASN][1000 genomes]
rs16916906	0.86[ASN][1000 genomes]
rs16916961	0.83[ASN][1000 genomes]
rs17212214	0.83[ASN][1000 genomes]
rs17212256	0.83[ASN][1000 genomes]
rs17284746	0.83[ASN][1000 genomes]
rs2037138	0.84[ASN][1000 genomes]
rs2037139	0.86[ASN][1000 genomes]
rs2069119	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2176120	0.86[ASN][1000 genomes]
rs34004633	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34058697	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34073804	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34213209	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34319820	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34364864	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34372756	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34677273	0.83[ASN][1000 genomes]
rs34780436	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34973406	0.88[ASN][1000 genomes]
rs35032384	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35509250	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35603537	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41453644	0.87[ASN][1000 genomes]
rs4292674	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4418329	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4436115	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4442134	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4534123	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4573262	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4598243	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4626585	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57212480	0.88[ASN][1000 genomes]
rs58561048	0.88[ASN][1000 genomes]
rs58583070	0.96[ASN][1000 genomes]
rs59602923	0.83[ASN][1000 genomes]
rs60153173	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60304457	0.83[ASN][1000 genomes]
rs60796336	0.83[ASN][1000 genomes]
rs61326367	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6473653	0.93[EUR][1000 genomes]
rs6473654	0.84[EUR][1000 genomes]
rs6768	0.84[AMR][1000 genomes]
rs71513546	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71513552	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71513561	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71513564	0.83[ASN][1000 genomes]
rs763550	0.88[ASN][1000 genomes]
rs9650179	0.83[ASN][1000 genomes]
rs9650180	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9650305	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9792352	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1023825	chr8:52668824-52716137	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52661400-52683200	Weak transcription	Left Ventricle	heart
2	chr8:52681800-52683400	Enhancers	Right Atrium	heart
3	chr8:52682400-52684200	Enhancers	Gastric	stomach
4	chr8:52682600-52683800	Enhancers	Fetal Lung	lung
5	chr8:52682800-52683400	Weak transcription	Right Ventricle	heart

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