Variant report

Variant	rs6473653
Chromosome Location	chr8:52670122-52670123
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:52652822..52654740-chr8:52669387..52671490,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11780891	0.84[ASN][1000 genomes]
rs11781330	0.84[JPT][hapmap]
rs11785467	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11786167	0.84[ASN][1000 genomes]
rs12674620	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12676345	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12678646	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12678680	0.97[ASN][1000 genomes]
rs12679983	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12680128	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13274159	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13275967	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13276400	0.91[EUR][1000 genomes]
rs2069119	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34004633	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34073804	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34213209	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34319820	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34364864	0.82[EUR][1000 genomes]
rs34780436	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35509250	0.91[EUR][1000 genomes]
rs35603537	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4292674	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4321994	0.93[EUR][1000 genomes]
rs4418329	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421347	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4425745	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4436115	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4442134	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534123	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4554456	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4565452	0.80[YRI][hapmap]
rs4573262	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4598243	0.82[EUR][1000 genomes]
rs4626584	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4626585	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4873595	0.83[AMR][1000 genomes]
rs60153173	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6473654	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7001968	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71513546	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71513549	0.93[EUR][1000 genomes]
rs71513552	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7459977	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv890898	chr8:52579964-52680933	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1023825	chr8:52668824-52716137	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52661400-52671400	Weak transcription	Right Atrium	heart
2	chr8:52661400-52683200	Weak transcription	Left Ventricle	heart
3	chr8:52666400-52675800	Weak transcription	Right Ventricle	heart

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