Variant report

Variant	rs10958510
Chromosome Location	chr8:57843325-57843326
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12676924	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13278878	1.00[CEU][hapmap]
rs34162009	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4738557	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57831000-57849600	Weak transcription	Pancreas	Pancrea
2	chr8:57841800-57843600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:57841800-57843600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:57841800-57843600	Weak transcription	Osteobl	bone
5	chr8:57841800-57843800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:57841800-57843800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:57841800-57843800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:57841800-57843800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:57841800-57844000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:57841800-57844000	Weak transcription	NHLF	lung
11	chr8:57841800-57844200	Weak transcription	Brain Anterior Caudate	brain
12	chr8:57842000-57843400	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:57842200-57843400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:57842800-57844800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:57843000-57843400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:57843000-57844200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:57843200-57843400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:57843200-57844000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr8:57843200-57844600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:57843200-57844600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr8:57843200-57844600	Enhancers	Fetal Muscle Leg	muscle
22	chr8:57843200-57844600	Enhancers	Fetal Stomach	stomach

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