Variant report

Variant	rs10959018
Chromosome Location	chr9:10284628-10284629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10511540	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.85[TSI][hapmap]
rs10511546	1.00[CEU][hapmap]
rs10511547	1.00[CEU][hapmap]
rs10959013	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10959017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10959019	0.93[JPT][hapmap]
rs11999741	1.00[CEU][hapmap]
rs11999772	1.00[CEU][hapmap]
rs11999844	1.00[CEU][hapmap]
rs1323497	1.00[CEU][hapmap];0.96[GIH][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1407915	1.00[CEU][hapmap]
rs1407918	1.00[CEU][hapmap]
rs1407924	1.00[CEU][hapmap]
rs16925729	1.00[CEU][hapmap];0.96[GIH][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925896	1.00[CEU][hapmap]
rs16925898	1.00[CEU][hapmap]
rs16925986	1.00[CEU][hapmap]
rs16926025	1.00[CEU][hapmap]
rs16926027	1.00[CEU][hapmap]
rs16926032	1.00[CEU][hapmap]
rs16926034	1.00[CEU][hapmap]
rs16926037	1.00[CEU][hapmap]
rs16926043	1.00[CEU][hapmap]
rs7028956	1.00[CEU][hapmap]
rs7849858	1.00[CEU][hapmap]
rs7861222	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2758179	chr9:10188450-10370398	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759666	chr9:10188450-10370398	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2762791	chr9:10253852-10325264	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1018748	chr9:10254793-10325252	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1033188	chr9:10255910-10325252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892313	chr9:10258040-10311000	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1025315	chr9:10261734-10325252	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1026525	chr9:10284044-10310942	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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