Variant report

Variant	rs16925896
Chromosome Location	chr9:10371980-10371981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511540	1.00[CEU][hapmap]
rs10511546	1.00[CEU][hapmap]
rs10511547	1.00[CEU][hapmap]
rs10959013	1.00[CEU][hapmap]
rs10959017	1.00[CEU][hapmap]
rs10959018	1.00[CEU][hapmap]
rs11999741	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs11999772	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs11999844	1.00[CEU][hapmap]
rs1323497	1.00[CEU][hapmap]
rs1323507	1.00[YRI][hapmap]
rs1407915	1.00[CEU][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1407918	1.00[CEU][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1407924	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs16925729	1.00[CEU][hapmap]
rs16925898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925941	0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16925986	1.00[CEU][hapmap]
rs16926025	1.00[CEU][hapmap]
rs16926027	1.00[CEU][hapmap]
rs16926032	1.00[CEU][hapmap]
rs16926034	1.00[CEU][hapmap]
rs16926037	1.00[CEU][hapmap]
rs16926043	1.00[CEU][hapmap]
rs7028956	1.00[CEU][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7849858	1.00[CEU][hapmap];0.94[CHD][hapmap]
rs7861222	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030657	chr9:10002355-10481262	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1033178	chr9:10169848-10428731	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1021630	chr9:10336415-10881683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv892315	chr9:10338320-10484849	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892316	chr9:10348091-10555358	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv466161	chr9:10365060-10557349	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv613378	chr9:10365060-10557349	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1018972	chr9:10365083-10504217	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv466162	chr9:10369161-10406755	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv613379	chr9:10369161-10406755	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10371400-10372000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:10371400-10372600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:10371600-10372000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:10371600-10372200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:10371600-10372600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:10371600-10372600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:10371800-10372600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:10371800-10372600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:10371800-10372600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:10371800-10372600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:10371800-10372800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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