Variant report

Variant	rs1096053
Chromosome Location	chr6:72345992-72345993
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72345004..72347382-chr6:72350554..72353265,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1032166	0.93[CEU][hapmap]
rs12663567	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1386192	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1386193	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1486606	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1486607	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1486610	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs272213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs272226	0.83[ASN][1000 genomes]
rs4361579	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4449595	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6453556	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6908161	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6917926	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6918255	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6923050	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs747549	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs829276	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9341328	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9341329	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9341331	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9342854	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9342855	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9342856	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9342857	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9351832	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9351833	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9351834	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9358964	0.84[JPT][hapmap]
rs9358965	0.89[EUR][1000 genomes]
rs9358966	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9360467	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9360468	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9360469	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9360470	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9360471	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9360473	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72345200-72346000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:72345200-72346200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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