Variant report

Variant	rs10960958
Chromosome Location	chr9:13165075-13165076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10116304	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10116749	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10120857	0.84[ASN][1000 genomes]
rs10122431	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10125770	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10511577	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10733254	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738323	0.86[EUR][1000 genomes]
rs10738324	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10738325	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756454	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10756455	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756456	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756457	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756458	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756459	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756460	0.86[ASN][1000 genomes]
rs10809906	0.83[ASN][1000 genomes]
rs10809907	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10809908	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10809912	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10809913	0.86[ASN][1000 genomes]
rs10960955	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10960959	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12351444	0.90[ASN][1000 genomes]
rs1331668	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1331670	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1331672	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1331673	0.88[ASN][1000 genomes]
rs1331674	0.90[ASN][1000 genomes]
rs1331675	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1360058	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1556421	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1854414	0.85[EUR][1000 genomes]
rs1854907	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1854908	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1854909	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1929541	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1999393	0.90[ASN][1000 genomes]
rs2225483	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274856	0.90[ASN][1000 genomes]
rs2297003	0.85[EUR][1000 genomes]
rs35068818	0.87[EUR][1000 genomes]
rs3818595	0.85[EUR][1000 genomes]
rs4237130	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58794982	0.85[ASN][1000 genomes]
rs6474753	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474754	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474755	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7024892	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7035244	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7037618	0.87[ASN][1000 genomes]
rs7037704	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7039646	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7040347	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72706366	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7859465	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7867993	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7871112	0.87[EUR][1000 genomes]
rs7871575	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9886797	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13103200-13175600	Weak transcription	HepG2	liver
2	chr9:13121600-13225200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:13122600-13186400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:13135400-13223600	Weak transcription	Lung	lung
5	chr9:13136000-13192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:13138800-13191800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:13139000-13188200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:13139800-13174800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:13140200-13167800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:13140200-13174800	Weak transcription	Right Ventricle	heart
11	chr9:13141000-13181600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:13141000-13197800	Weak transcription	NHDF-Ad	bronchial
13	chr9:13141200-13188200	Weak transcription	NHLF	lung
14	chr9:13143600-13202200	Weak transcription	Pancreas	Pancrea
15	chr9:13143800-13167800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:13145400-13203200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:13145400-13228600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:13146600-13202400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:13147000-13178000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:13147800-13167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:13148000-13167600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:13148200-13167600	Weak transcription	NH-A	brain
23	chr9:13150000-13167400	Weak transcription	HSMMtube	muscle
24	chr9:13150000-13193200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:13150400-13180800	Weak transcription	A549	lung
26	chr9:13153000-13167800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:13153200-13194800	Weak transcription	Fetal Kidney	kidney
28	chr9:13153800-13167800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:13154800-13167000	Weak transcription	Colon Smooth Muscle	Colon
30	chr9:13156800-13201400	Weak transcription	Psoas Muscle	Psoas
31	chr9:13157400-13175400	Weak transcription	Placenta	Placenta
32	chr9:13157600-13167800	Weak transcription	Osteobl	bone
33	chr9:13157800-13167400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:13158000-13167800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:13158200-13173200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:13158400-13167800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:13158600-13167200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:13158800-13188800	Weak transcription	Fetal Heart	heart
39	chr9:13159000-13165600	Weak transcription	Gastric	stomach
40	chr9:13160200-13167000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:13160600-13167600	Weak transcription	HSMM	muscle
42	chr9:13160600-13183000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:13161200-13166600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:13161200-13167600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr9:13161200-13167800	Weak transcription	Brain Anterior Caudate	brain
46	chr9:13161400-13167600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:13161600-13165800	Weak transcription	Fetal Lung	lung
48	chr9:13161600-13170800	Weak transcription	Fetal Intestine Small	intestine
49	chr9:13161600-13188200	Weak transcription	Fetal Stomach	stomach
50	chr9:13161800-13170800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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