Variant report

Variant	rs10961032
Chromosome Location	chr9:13370148-13370149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10114398	0.92[EUR][1000 genomes]
rs10118696	0.84[EUR][1000 genomes]
rs10121137	1.00[EUR][1000 genomes]
rs10122032	1.00[EUR][1000 genomes]
rs10126021	1.00[EUR][1000 genomes]
rs1147787	1.00[ASN][1000 genomes]
rs1494380	0.84[EUR][1000 genomes]
rs16930317	0.83[EUR][1000 genomes]
rs7020134	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752281	chr9:13284600-13405072	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13364600-13370200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:13368800-13370400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:13369000-13370200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:13369000-13370600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:13369000-13371600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:13370000-13371200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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