Variant report

Variant	rs16930317
Chromosome Location	chr9:13425163-13425164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10114398	0.91[EUR][1000 genomes]
rs10116631	0.90[EUR][1000 genomes]
rs10118696	0.83[EUR][1000 genomes]
rs10121137	0.83[EUR][1000 genomes]
rs10122032	0.83[EUR][1000 genomes]
rs10126021	0.83[EUR][1000 genomes]
rs10961032	0.83[EUR][1000 genomes]
rs12345294	0.90[EUR][1000 genomes]
rs1360255	0.81[EUR][1000 genomes]
rs1494380	0.83[EUR][1000 genomes]
rs57249362	0.90[EUR][1000 genomes]
rs7020134	0.83[EUR][1000 genomes]
rs7047085	0.90[EUR][1000 genomes]
rs7047229	0.90[EUR][1000 genomes]
rs73410153	0.90[EUR][1000 genomes]
rs73410159	0.81[EUR][1000 genomes]
rs7849805	0.81[EUR][1000 genomes]
rs7863166	0.81[EUR][1000 genomes]
rs7867019	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13422600-13427800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13425000-13425200	Enhancers	Brain Germinal Matrix	brain
3	chr9:13425000-13426200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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