Variant report

Variant	rs12345294
Chromosome Location	chr9:13383487-13383488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10114398	0.82[EUR][1000 genomes]
rs10116631	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360255	0.90[EUR][1000 genomes]
rs16930317	0.90[EUR][1000 genomes]
rs57249362	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7047085	1.00[EUR][1000 genomes]
rs7047229	1.00[EUR][1000 genomes]
rs73410153	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410159	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7849805	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7863166	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7867019	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752281	chr9:13284600-13405072	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527389	chr9:13380507-13388038	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13378600-13386600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:13378800-13386400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:13381200-13385000	Weak transcription	Pancreas	Pancrea
4	chr9:13383000-13383600	Enhancers	HSMM	muscle
5	chr9:13383000-13384000	Enhancers	HUVEC	blood vessel
6	chr9:13383200-13383600	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links