Variant report

Variant	rs7047229
Chromosome Location	chr9:13425843-13425844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10114398	0.82[EUR][1000 genomes]
rs10116631	1.00[EUR][1000 genomes]
rs12345294	1.00[EUR][1000 genomes]
rs1360255	0.90[EUR][1000 genomes]
rs16930317	0.90[EUR][1000 genomes]
rs57249362	1.00[EUR][1000 genomes]
rs7047085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410153	1.00[EUR][1000 genomes]
rs73410159	0.90[EUR][1000 genomes]
rs7849805	0.90[EUR][1000 genomes]
rs7863166	0.90[EUR][1000 genomes]
rs7867019	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13422600-13427800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13425000-13426200	Weak transcription	Fetal Lung	lung
3	chr9:13425600-13428200	Weak transcription	Brain Germinal Matrix	brain
4	chr9:13425800-13426600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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