Variant report

Variant	rs10961340
Chromosome Location	chr9:14024486-14024487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1575254	1.00[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs1853195	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs1853196	0.83[EUR][1000 genomes]
rs1923353	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6474805	0.84[CEU][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7022407	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10961340	C9orf150	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13994000-14027000	Weak transcription	Aorta	Aorta
2	chr9:14014000-14027000	Weak transcription	Right Atrium	heart
3	chr9:14015400-14027000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:14020600-14026800	Weak transcription	Fetal Heart	heart
5	chr9:14022600-14024800	Weak transcription	Right Ventricle	heart
6	chr9:14022600-14026600	Weak transcription	HUVEC	blood vessel
7	chr9:14022600-14026800	Weak transcription	Fetal Lung	lung
8	chr9:14022800-14028200	Weak transcription	Hela-S3	cervix
9	chr9:14023200-14029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:14024400-14024600	Enhancers	Left Ventricle	heart
11	chr9:14024400-14024800	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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