Variant report

Variant	rs1575254
Chromosome Location	chr9:14024192-14024193
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10810079	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10961340	1.00[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs1853195	0.94[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1853196	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6474805	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs7022407	0.81[CEU][hapmap];0.85[GIH][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13994000-14027000	Weak transcription	Aorta	Aorta
2	chr9:14014000-14027000	Weak transcription	Right Atrium	heart
3	chr9:14015400-14027000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:14020600-14026800	Weak transcription	Fetal Heart	heart
5	chr9:14022400-14024200	Weak transcription	Psoas Muscle	Psoas
6	chr9:14022600-14024400	Weak transcription	Left Ventricle	heart
7	chr9:14022600-14024800	Weak transcription	Right Ventricle	heart
8	chr9:14022600-14026600	Weak transcription	HUVEC	blood vessel
9	chr9:14022600-14026800	Weak transcription	Fetal Lung	lung
10	chr9:14022800-14028200	Weak transcription	Hela-S3	cervix
11	chr9:14023200-14029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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