Variant report

Variant	rs10961456
Chromosome Location	chr9:14270025-14270026
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:14257197..14261472-chr9:14269908..14272185,3	MCF-7	breast:
2	chr9:14269033..14270818-chr9:14320491..14322690,2	K562	blood:
3	chr9:14268295..14270071-chr9:14312148..14313733,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10810121	0.88[CHB][hapmap]
rs10961455	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7029940	1.00[CHB][hapmap];0.85[CHD][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv892598	chr9:14234315-14274950	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14251600-14271000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:14251800-14270800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:14252000-14270800	Weak transcription	Ovary	ovary
4	chr9:14252800-14271600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:14257000-14270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:14257000-14270800	Weak transcription	Hela-S3	cervix
7	chr9:14257000-14273200	Weak transcription	Esophagus	oesophagus
8	chr9:14257200-14270800	Weak transcription	NHLF	lung
9	chr9:14257800-14270800	Weak transcription	Lung	lung
10	chr9:14258400-14273400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:14259000-14270200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:14259400-14270400	Weak transcription	NH-A	brain
13	chr9:14259600-14271000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:14260400-14270800	Weak transcription	HSMM	muscle
15	chr9:14260400-14270800	Weak transcription	HSMMtube	muscle
16	chr9:14260400-14271000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:14260400-14273000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:14260800-14270800	Weak transcription	A549	lung
19	chr9:14260800-14271000	Weak transcription	HMEC	breast
20	chr9:14260800-14273000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:14262200-14271400	Weak transcription	Fetal Kidney	kidney
22	chr9:14263600-14270200	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:14264000-14270600	Weak transcription	Adipose Nuclei	Adipose
24	chr9:14264000-14270800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:14264800-14271200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:14265000-14273000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:14265200-14271000	Weak transcription	Small Intestine	intestine
28	chr9:14265600-14270800	Weak transcription	Aorta	Aorta
29	chr9:14265600-14271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:14265800-14271000	Weak transcription	NHEK	skin
31	chr9:14266000-14271200	Weak transcription	Stomach Mucosa	stomach
32	chr9:14266200-14270800	Weak transcription	Psoas Muscle	Psoas
33	chr9:14266200-14270800	Weak transcription	Right Ventricle	heart
34	chr9:14266400-14270800	Weak transcription	Right Atrium	heart
35	chr9:14266400-14271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:14266600-14270800	Weak transcription	Left Ventricle	heart
37	chr9:14268400-14273800	Enhancers	Fetal Heart	heart
38	chr9:14268600-14271000	Weak transcription	Pancreas	Pancrea
39	chr9:14268600-14273000	Weak transcription	Placenta	Placenta
40	chr9:14268600-14273200	Enhancers	Fetal Brain Male	brain
41	chr9:14268600-14273400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr9:14268600-14273600	Enhancers	Brain Anterior Caudate	brain
43	chr9:14268600-14273800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr9:14268800-14270400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr9:14268800-14270400	Weak transcription	Fetal Muscle Leg	muscle
46	chr9:14268800-14270800	Enhancers	Fetal Brain Female	brain
47	chr9:14268800-14271800	Enhancers	Brain Angular Gyrus	brain
48	chr9:14268800-14273200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr9:14269000-14270800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:14269200-14275600	Enhancers	Liver	Liver

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