Variant report

Variant	rs10961455
Chromosome Location	chr9:14269256-14269257
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14269033..14270818-chr9:14320491..14322690,2	K562	blood:
2	chr9:14268295..14270071-chr9:14312148..14313733,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10961456	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10961460	1.00[AMR][1000 genomes]
rs7029940	0.90[ASW][hapmap];0.82[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7856646	0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv892598	chr9:14234315-14274950	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14251600-14271000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:14251800-14270800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:14252000-14270800	Weak transcription	Ovary	ovary
4	chr9:14252800-14271600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:14257000-14270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:14257000-14270800	Weak transcription	Hela-S3	cervix
7	chr9:14257000-14273200	Weak transcription	Esophagus	oesophagus
8	chr9:14257200-14270800	Weak transcription	NHLF	lung
9	chr9:14257800-14270800	Weak transcription	Lung	lung
10	chr9:14258400-14273400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:14259000-14270200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:14259400-14270400	Weak transcription	NH-A	brain
13	chr9:14259600-14269400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:14259600-14271000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:14260400-14270800	Weak transcription	HSMM	muscle
16	chr9:14260400-14270800	Weak transcription	HSMMtube	muscle
17	chr9:14260400-14271000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:14260400-14273000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:14260800-14270800	Weak transcription	A549	lung
20	chr9:14260800-14271000	Weak transcription	HMEC	breast
21	chr9:14260800-14273000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr9:14262200-14269400	Weak transcription	Fetal Stomach	stomach
23	chr9:14262200-14271400	Weak transcription	Fetal Kidney	kidney
24	chr9:14263200-14269400	Weak transcription	Brain Germinal Matrix	brain
25	chr9:14263600-14270200	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:14263800-14269400	Weak transcription	HUVEC	blood vessel
27	chr9:14263800-14269800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:14264000-14269400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:14264000-14269400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr9:14264000-14270600	Weak transcription	Adipose Nuclei	Adipose
31	chr9:14264000-14270800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr9:14264200-14269400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:14264200-14269600	Weak transcription	Brain Hippocampus Middle	brain
34	chr9:14264400-14270000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr9:14264800-14271200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:14265000-14273000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:14265200-14271000	Weak transcription	Small Intestine	intestine
38	chr9:14265400-14270000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr9:14265600-14270800	Weak transcription	Aorta	Aorta
40	chr9:14265600-14271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr9:14265800-14271000	Weak transcription	NHEK	skin
42	chr9:14266000-14271200	Weak transcription	Stomach Mucosa	stomach
43	chr9:14266200-14270800	Weak transcription	Psoas Muscle	Psoas
44	chr9:14266200-14270800	Weak transcription	Right Ventricle	heart
45	chr9:14266400-14270800	Weak transcription	Right Atrium	heart
46	chr9:14266400-14271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:14266600-14270800	Weak transcription	Left Ventricle	heart
48	chr9:14268200-14269400	Strong transcription	Fetal Lung	lung
49	chr9:14268400-14273800	Enhancers	Fetal Heart	heart
50	chr9:14268600-14269400	Weak transcription	Brain Substantia Nigra	brain

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