Variant report

Variant	rs10961460
Chromosome Location	chr9:14283489-14283490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10961455	1.00[AMR][1000 genomes]
rs7025098	0.87[ASN][1000 genomes]
rs7029940	1.00[AMR][1000 genomes]
rs7861214	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020298	chr9:14277253-14294980	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14271200-14306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:14272200-14296800	Weak transcription	Hela-S3	cervix
3	chr9:14273600-14285400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:14278600-14294800	Weak transcription	Pancreas	Pancrea
5	chr9:14279000-14284200	Enhancers	Osteobl	bone
6	chr9:14279200-14283800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:14281000-14284000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:14281000-14284200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:14281200-14283600	Enhancers	Adipose Nuclei	Adipose
10	chr9:14281200-14283800	Enhancers	Brain Angular Gyrus	brain
11	chr9:14281400-14283800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr9:14281600-14283600	Enhancers	HSMM	muscle
13	chr9:14281600-14283800	Enhancers	NHLF	lung
14	chr9:14281600-14284600	Enhancers	Fetal Heart	heart
15	chr9:14281800-14294800	Weak transcription	HUVEC	blood vessel
16	chr9:14282000-14283800	Weak transcription	Fetal Brain Male	brain
17	chr9:14282000-14296000	Weak transcription	Brain Germinal Matrix	brain
18	chr9:14282400-14283600	Genic enhancers	Fetal Brain Female	brain
19	chr9:14282400-14283800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:14282400-14284200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:14282400-14284200	Enhancers	Liver	Liver
22	chr9:14282400-14284600	Enhancers	Duodenum Mucosa	Duodenum
23	chr9:14282600-14283600	Genic enhancers	A549	lung
24	chr9:14282600-14283800	Enhancers	Gastric	stomach
25	chr9:14282600-14283800	Enhancers	Left Ventricle	heart
26	chr9:14282600-14284200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:14282600-14284200	Enhancers	Fetal Intestine Large	intestine
28	chr9:14282600-14284200	Enhancers	Fetal Intestine Small	intestine
29	chr9:14282800-14283600	Strong transcription	Fetal Muscle Leg	muscle
30	chr9:14282800-14283600	Enhancers	Ovary	ovary
31	chr9:14282800-14283800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:14282800-14283800	Enhancers	Colon Smooth Muscle	Colon
33	chr9:14282800-14283800	Enhancers	Right Ventricle	heart
34	chr9:14282800-14283800	Enhancers	Small Intestine	intestine
35	chr9:14282800-14283800	Genic enhancers	NH-A	brain
36	chr9:14282800-14284000	Enhancers	Brain Hippocampus Middle	brain
37	chr9:14282800-14284000	Genic enhancers	Fetal Lung	lung
38	chr9:14282800-14284000	Enhancers	HepG2	liver
39	chr9:14282800-14294400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:14282800-14294600	Weak transcription	NHEK	skin
41	chr9:14282800-14296400	Weak transcription	HMEC	breast
42	chr9:14283000-14283600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr9:14283000-14291800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr9:14283200-14283600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:14283200-14283800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:14283200-14283800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr9:14283200-14283800	Enhancers	Psoas Muscle	Psoas
48	chr9:14283200-14283800	Enhancers	Right Atrium	heart
49	chr9:14283200-14283800	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr9:14283200-14284000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links