Variant report

Variant	rs7861214
Chromosome Location	chr9:14285027-14285028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14283703..14285763-chr9:14310373..14312527,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10961460	0.81[AFR][1000 genomes]
rs7025098	0.87[ASN][1000 genomes]
rs7856646	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020298	chr9:14277253-14294980	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14271200-14306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:14272200-14296800	Weak transcription	Hela-S3	cervix
3	chr9:14273600-14285400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:14278600-14294800	Weak transcription	Pancreas	Pancrea
5	chr9:14281800-14294800	Weak transcription	HUVEC	blood vessel
6	chr9:14282000-14296000	Weak transcription	Brain Germinal Matrix	brain
7	chr9:14282800-14294400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:14282800-14294600	Weak transcription	NHEK	skin
9	chr9:14282800-14296400	Weak transcription	HMEC	breast
10	chr9:14283000-14291800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:14283400-14292400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:14283600-14288600	Weak transcription	Adipose Nuclei	Adipose
13	chr9:14283600-14297000	Weak transcription	HSMM	muscle
14	chr9:14283600-14298400	Weak transcription	Ovary	ovary
15	chr9:14283800-14285200	Weak transcription	Left Ventricle	heart
16	chr9:14283800-14285200	Weak transcription	Psoas Muscle	Psoas
17	chr9:14283800-14285200	Weak transcription	Right Atrium	heart
18	chr9:14283800-14286600	Weak transcription	Right Ventricle	heart
19	chr9:14283800-14288400	Weak transcription	Colon Smooth Muscle	Colon
20	chr9:14283800-14288400	Weak transcription	Fetal Brain Female	brain
21	chr9:14283800-14288800	Weak transcription	NH-A	brain
22	chr9:14283800-14292200	Weak transcription	A549	lung
23	chr9:14283800-14292600	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:14283800-14294600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr9:14283800-14296400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:14283800-14296600	Weak transcription	Brain Angular Gyrus	brain
27	chr9:14283800-14301600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:14284000-14285800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr9:14284000-14286000	Weak transcription	Fetal Brain Male	brain
30	chr9:14284000-14288600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:14284000-14296400	Weak transcription	Brain Substantia Nigra	brain
32	chr9:14284200-14285600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr9:14284200-14285600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:14284200-14286000	Weak transcription	Liver	Liver
35	chr9:14284200-14288800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:14284200-14289800	Weak transcription	Fetal Lung	lung
37	chr9:14284200-14290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:14284200-14294800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr9:14284200-14298600	Weak transcription	Fetal Stomach	stomach
40	chr9:14284200-14301800	Weak transcription	Osteobl	bone
41	chr9:14284600-14285600	Weak transcription	Fetal Heart	heart

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