Variant report

Variant	rs7025098
Chromosome Location	chr9:14283135-14283136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10961460	0.87[ASN][1000 genomes]
rs7861214	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020298	chr9:14277253-14294980	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14271200-14306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:14272200-14296800	Weak transcription	Hela-S3	cervix
3	chr9:14273600-14285400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:14277800-14283200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:14278600-14283200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:14278600-14294800	Weak transcription	Pancreas	Pancrea
7	chr9:14278800-14283400	Weak transcription	Fetal Stomach	stomach
8	chr9:14279000-14284200	Enhancers	Osteobl	bone
9	chr9:14279200-14283200	Weak transcription	Brain Substantia Nigra	brain
10	chr9:14279200-14283800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:14279400-14283400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:14279400-14283400	Weak transcription	Brain Anterior Caudate	brain
13	chr9:14281000-14284000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:14281000-14284200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:14281200-14283600	Enhancers	Adipose Nuclei	Adipose
16	chr9:14281200-14283800	Enhancers	Brain Angular Gyrus	brain
17	chr9:14281400-14283400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:14281400-14283800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr9:14281600-14283600	Enhancers	HSMM	muscle
20	chr9:14281600-14283800	Enhancers	NHLF	lung
21	chr9:14281600-14284600	Enhancers	Fetal Heart	heart
22	chr9:14281800-14283200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:14281800-14283200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:14281800-14283400	Weak transcription	Fetal Kidney	kidney
25	chr9:14281800-14294800	Weak transcription	HUVEC	blood vessel
26	chr9:14282000-14283200	Weak transcription	Right Atrium	heart
27	chr9:14282000-14283800	Weak transcription	Fetal Brain Male	brain
28	chr9:14282000-14296000	Weak transcription	Brain Germinal Matrix	brain
29	chr9:14282400-14283600	Genic enhancers	Fetal Brain Female	brain
30	chr9:14282400-14283800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:14282400-14284200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr9:14282400-14284200	Enhancers	Liver	Liver
33	chr9:14282400-14284600	Enhancers	Duodenum Mucosa	Duodenum
34	chr9:14282600-14283600	Genic enhancers	A549	lung
35	chr9:14282600-14283800	Enhancers	Gastric	stomach
36	chr9:14282600-14283800	Enhancers	Left Ventricle	heart
37	chr9:14282600-14284200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:14282600-14284200	Enhancers	Fetal Intestine Large	intestine
39	chr9:14282600-14284200	Enhancers	Fetal Intestine Small	intestine
40	chr9:14282800-14283200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr9:14282800-14283200	Weak transcription	Psoas Muscle	Psoas
42	chr9:14282800-14283200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:14282800-14283200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr9:14282800-14283400	Enhancers	Rectal Smooth Muscle	rectum
45	chr9:14282800-14283600	Strong transcription	Fetal Muscle Leg	muscle
46	chr9:14282800-14283600	Enhancers	Ovary	ovary
47	chr9:14282800-14283800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:14282800-14283800	Enhancers	Colon Smooth Muscle	Colon
49	chr9:14282800-14283800	Enhancers	Right Ventricle	heart
50	chr9:14282800-14283800	Enhancers	Small Intestine	intestine

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