Variant report

Variant	rs7856646
Chromosome Location	chr9:14280421-14280422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14272688..14274248-chr9:14278922..14280756,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10961455	0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7861214	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1020298	chr9:14277253-14294980	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14271200-14306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:14272000-14281400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:14272200-14296800	Weak transcription	Hela-S3	cervix
4	chr9:14273400-14281600	Weak transcription	Fetal Intestine Small	intestine
5	chr9:14273600-14285400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:14274000-14282800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:14274400-14282600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:14274600-14282800	Enhancers	NH-A	brain
9	chr9:14275000-14282800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:14275200-14280600	Enhancers	Fetal Heart	heart
11	chr9:14275600-14282600	Weak transcription	Gastric	stomach
12	chr9:14277200-14281800	Enhancers	Fetal Brain Female	brain
13	chr9:14277200-14282000	Enhancers	Brain Germinal Matrix	brain
14	chr9:14277600-14282400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:14277600-14282800	Weak transcription	Ovary	ovary
16	chr9:14277800-14281600	Weak transcription	Fetal Brain Male	brain
17	chr9:14277800-14283200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr9:14278000-14281200	Weak transcription	Stomach Mucosa	stomach
19	chr9:14278200-14281000	Enhancers	HMEC	breast
20	chr9:14278200-14281400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:14278200-14281400	Weak transcription	Small Intestine	intestine
22	chr9:14278400-14282600	Weak transcription	A549	lung
23	chr9:14278600-14281200	Weak transcription	Brain Angular Gyrus	brain
24	chr9:14278600-14282800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:14278600-14283200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:14278600-14294800	Weak transcription	Pancreas	Pancrea
27	chr9:14278800-14281000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:14278800-14281400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:14278800-14281600	Weak transcription	HSMMtube	muscle
30	chr9:14278800-14282600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:14278800-14283400	Weak transcription	Fetal Stomach	stomach
32	chr9:14279000-14281200	Weak transcription	Adipose Nuclei	Adipose
33	chr9:14279000-14281200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:14279000-14282800	Weak transcription	HepG2	liver
35	chr9:14279000-14284200	Enhancers	Osteobl	bone
36	chr9:14279200-14281200	Enhancers	Colon Smooth Muscle	Colon
37	chr9:14279200-14281400	Weak transcription	Liver	Liver
38	chr9:14279200-14282600	Weak transcription	Fetal Muscle Leg	muscle
39	chr9:14279200-14283200	Weak transcription	Brain Substantia Nigra	brain
40	chr9:14279200-14283800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr9:14279400-14280600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:14279400-14280600	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:14279400-14281200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:14279400-14283400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:14279400-14283400	Weak transcription	Brain Anterior Caudate	brain
46	chr9:14279600-14282000	Enhancers	Rectal Smooth Muscle	rectum
47	chr9:14279800-14280600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:14279800-14280600	Weak transcription	NHEK	skin
49	chr9:14279800-14281000	Genic enhancers	HUVEC	blood vessel
50	chr9:14279800-14281600	Weak transcription	NHLF	lung

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