Variant report

Variant	rs10961530
Chromosome Location	chr9:14466354-14466355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:14465013..14466518-chr9:14768250..14769873,6	MCF-7	breast:
2	chr9:14464829..14467118-chr9:14468506..14470700,3	K562	blood:
3	chr9:14465748..14467982-chr9:14470489..14472368,2	MCF-7	breast:
4	chr9:14464829..14467062-chr9:14469072..14470700,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7031064	0.82[ASN][1000 genomes]
rs7034703	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv892600	chr9:14370172-14469146	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv892602	chr9:14446001-14472090	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892603	chr9:14446001-14475352	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14465400-14467200	Enhancers	Pancreas	Pancrea
2	chr9:14465600-14466800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:14465600-14467400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:14465800-14466400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:14465800-14466400	Flanking Active TSS	NHEK	skin
6	chr9:14465800-14466600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr9:14465800-14466600	Enhancers	Esophagus	oesophagus
8	chr9:14465800-14466600	Enhancers	HepG2	liver
9	chr9:14465800-14466800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr9:14465800-14466800	Enhancers	Brain Germinal Matrix	brain
11	chr9:14465800-14466800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr9:14465800-14467000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:14465800-14467000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:14465800-14467200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:14465800-14467200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:14465800-14467200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr9:14465800-14467200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:14465800-14467200	Enhancers	Fetal Lung	lung
19	chr9:14465800-14467400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr9:14465800-14467400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr9:14465800-14467400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:14465800-14467400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:14465800-14467400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr9:14465800-14467400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:14465800-14467600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr9:14465800-14467600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr9:14466000-14466600	Enhancers	Fetal Intestine Small	intestine
28	chr9:14466000-14467000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:14466000-14467200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr9:14466200-14466400	Enhancers	Duodenum Mucosa	Duodenum
31	chr9:14466200-14466800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:14466200-14466800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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