Variant report

Variant	rs10961784
Chromosome Location	chr9:14903697-14903698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14897379..14899021-chr9:14903144..14904953,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10961785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1412725	0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1855142	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs4147129	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4543641	0.83[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7034380	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs940119	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs940120	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018416	chr9:14846753-14921247	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14881200-14904600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:14884200-14907400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:14895200-14906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:14900000-14906200	Weak transcription	Fetal Intestine Large	intestine
5	chr9:14900200-14906600	Weak transcription	Adipose Nuclei	Adipose
6	chr9:14900200-14906600	Weak transcription	Aorta	Aorta
7	chr9:14900800-14904600	Weak transcription	Pancreas	Pancrea
8	chr9:14902000-14904000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:14902000-14904000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:14902200-14903800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:14902200-14905000	Genic enhancers	Fetal Kidney	kidney
12	chr9:14902200-14906000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:14902400-14904600	Weak transcription	HepG2	liver
14	chr9:14902400-14906200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:14902600-14904400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:14902600-14906200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:14902600-14906600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:14902600-14906600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:14902600-14906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:14902800-14904600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:14902800-14904800	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:14902800-14906400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:14902800-14906400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr9:14902800-14906600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:14903000-14906000	Weak transcription	Fetal Heart	heart
26	chr9:14903200-14904600	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:14903200-14908600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:14903400-14905800	Weak transcription	Fetal Stomach	stomach
29	chr9:14903600-14904400	Weak transcription	Fetal Lung	lung
30	chr9:14903600-14906400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:14903600-14906400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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