Variant report

Variant	rs4543641
Chromosome Location	chr9:14901626-14901627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10961784	0.83[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10961785	0.83[CHB][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1412725	0.87[CHB][hapmap]
rs1855142	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs4147129	0.88[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes]
rs6474870	0.99[ASN][1000 genomes]
rs7034380	0.83[CHB][hapmap];0.95[GIH][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs940119	0.82[CHB][hapmap]
rs940120	0.83[CHB][hapmap];0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1018416	chr9:14846753-14921247	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14881200-14904600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:14882000-14902400	Weak transcription	Fetal Stomach	stomach
3	chr9:14884200-14907400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:14887400-14902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:14895200-14906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:14897000-14902000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:14897000-14902400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:14897200-14901800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:14897200-14902000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:14897200-14902200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:14897200-14902200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:14897400-14902000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:14897400-14902000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:14899400-14901800	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:14900000-14906200	Weak transcription	Fetal Intestine Large	intestine
16	chr9:14900200-14906600	Weak transcription	Adipose Nuclei	Adipose
17	chr9:14900200-14906600	Weak transcription	Aorta	Aorta
18	chr9:14900400-14902200	Weak transcription	Fetal Kidney	kidney
19	chr9:14900600-14901800	Weak transcription	HepG2	liver
20	chr9:14900800-14901800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:14900800-14902000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:14900800-14904600	Weak transcription	Pancreas	Pancrea
23	chr9:14901000-14902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:14901000-14902000	Weak transcription	Fetal Lung	lung
25	chr9:14901000-14902400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:14901400-14902200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:14901600-14902200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:14901600-14903200	Enhancers	Colon Smooth Muscle	Colon

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