Variant report

Variant	rs10962308
Chromosome Location	chr9:16166661-16166662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10962303	0.84[AMR][1000 genomes]
rs10962304	0.84[AMR][1000 genomes]
rs10962309	0.81[ASN][1000 genomes]
rs10962310	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10962311	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10962312	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10962313	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10962314	0.86[EUR][1000 genomes]
rs10962316	0.83[EUR][1000 genomes]
rs12235736	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1328293	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62547306	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9802700	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892638	chr9:16106659-16172580	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16157000-16171000	Weak transcription	Ovary	ovary
2	chr9:16164800-16166800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:16166400-16168000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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