Variant report

Variant	rs10962309
Chromosome Location	chr9:16172869-16172870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10962308	0.81[ASN][1000 genomes]
rs10962310	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10962311	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10962312	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10962313	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10962314	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962315	0.92[ASN][1000 genomes]
rs10962316	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962319	0.82[ASN][1000 genomes]
rs1328293	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9802700	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16171400-16173000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:16171600-16173800	Enhancers	Fetal Kidney	kidney
3	chr9:16172000-16173000	Enhancers	Fetal Lung	lung
4	chr9:16172000-16173000	Enhancers	Fetal Stomach	stomach
5	chr9:16172200-16173000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:16172400-16175400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:16172800-16182800	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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