Variant report

Variant	rs10962315
Chromosome Location	chr9:16176912-16176913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10962309	0.92[ASN][1000 genomes]
rs10962310	0.93[ASN][1000 genomes]
rs10962311	0.96[ASN][1000 genomes]
rs10962312	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10962313	0.96[ASN][1000 genomes]
rs10962314	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10962316	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10962319	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10962321	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1328293	0.92[ASN][1000 genomes]
rs16934196	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16934202	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4961667	0.81[ASN][1000 genomes]
rs9802700	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16172800-16182800	Weak transcription	Ovary	ovary
2	chr9:16175800-16179200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16175800-16180600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:16176800-16180600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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