Variant report

Variant	rs16934202
Chromosome Location	chr9:16191512-16191513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10962310	0.80[ASN][1000 genomes]
rs10962311	0.82[ASN][1000 genomes]
rs10962312	0.82[ASN][1000 genomes]
rs10962313	0.82[ASN][1000 genomes]
rs10962314	0.86[ASN][1000 genomes]
rs10962315	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10962316	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10962319	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10962321	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12001383	0.98[EUR][1000 genomes]
rs12002003	0.92[EUR][1000 genomes]
rs12005826	0.88[EUR][1000 genomes]
rs16934192	0.92[EUR][1000 genomes]
rs16934196	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16934204	0.95[EUR][1000 genomes]
rs16934205	0.98[EUR][1000 genomes]
rs4076698	1.00[EUR][1000 genomes]
rs4961667	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56314211	0.93[EUR][1000 genomes]
rs58894129	0.95[EUR][1000 genomes]
rs61542621	1.00[EUR][1000 genomes]
rs9802700	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16934202	UBE2Z	trans	parietal	SCAN
rs16934202	PRPF19	trans	parietal	SCAN
rs16934202	MKRN1	trans	parietal	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16179800-16192000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:16185200-16193600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:16185600-16192200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:16185600-16196400	Weak transcription	Aorta	Aorta
5	chr9:16189800-16192000	Weak transcription	Primary T cells from cord blood	blood
6	chr9:16190000-16193000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:16190600-16192000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:16190600-16193600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:16190600-16193800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:16190800-16192000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:16190800-16193000	Enhancers	Colon Smooth Muscle	Colon
12	chr9:16190800-16193400	Enhancers	Fetal Stomach	stomach
13	chr9:16190800-16193600	Enhancers	NHDF-Ad	bronchial
14	chr9:16190800-16193800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:16190800-16194000	Enhancers	NH-A	brain
16	chr9:16190800-16194400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:16191000-16191600	Enhancers	Osteobl	bone
18	chr9:16191000-16191800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr9:16191000-16193200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:16191000-16193600	Enhancers	HSMM	muscle
21	chr9:16191000-16193600	Enhancers	NHLF	lung
22	chr9:16191000-16194200	Enhancers	Fetal Muscle Leg	muscle
23	chr9:16191200-16191600	Enhancers	Placenta	Placenta
24	chr9:16191200-16193200	Enhancers	Hela-S3	cervix
25	chr9:16191200-16193400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:16191200-16193400	Enhancers	Rectal Smooth Muscle	rectum
27	chr9:16191200-16193800	Enhancers	HSMMtube	muscle
28	chr9:16191400-16191600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:16191400-16191600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:16191400-16191600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr9:16191400-16192000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr9:16191400-16192000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:16191400-16192000	Enhancers	Stomach Smooth Muscle	stomach
34	chr9:16191400-16192200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr9:16191400-16192200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:16191400-16192200	Bivalent Enhancer	Fetal Heart	heart
37	chr9:16191400-16192400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr9:16191400-16192600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:16191400-16192800	Flanking Active TSS	A549	lung
40	chr9:16191400-16193400	Enhancers	Fetal Lung	lung
41	chr9:16191400-16193800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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