Variant report

Variant	rs10963611
Chromosome Location	chr9:18456798-18456799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10120111	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125046	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10963610	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10963612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345456	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349955	1.00[AMR][1000 genomes]
rs12353438	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1576896	1.00[AMR][1000 genomes]
rs16936735	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489992	1.00[AMR][1000 genomes]
rs7020916	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417008	1.00[AMR][1000 genomes]
rs73417095	1.00[AMR][1000 genomes]
rs73418919	1.00[AMR][1000 genomes]
rs73421026	1.00[AMR][1000 genomes]
rs73429660	1.00[AMR][1000 genomes]
rs73431002	1.00[AMR][1000 genomes]
rs73433514	1.00[AMR][1000 genomes]
rs7859309	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18443200-18457400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:18448400-18456800	Weak transcription	NHLF	lung
3	chr9:18453400-18456800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:18453400-18457400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:18454200-18456800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:18454200-18456800	Weak transcription	NHDF-Ad	bronchial
7	chr9:18455800-18458000	Enhancers	Liver	Liver
8	chr9:18456000-18457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:18456200-18457000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr9:18456200-18457200	Enhancers	Fetal Intestine Large	intestine
11	chr9:18456200-18457200	Enhancers	HepG2	liver
12	chr9:18456400-18457000	Weak transcription	Hela-S3	cervix
13	chr9:18456600-18457000	Weak transcription	NHEK	skin
14	chr9:18456600-18458000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:18456600-18458600	Weak transcription	Fetal Intestine Small	intestine

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