Variant report

Variant	rs73417095
Chromosome Location	chr9:18438084-18438085
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18436804..18438586-chr9:18439890..18441991,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10120111	1.00[AMR][1000 genomes]
rs10125046	1.00[AMR][1000 genomes]
rs10963610	1.00[AMR][1000 genomes]
rs10963611	1.00[AMR][1000 genomes]
rs10963612	1.00[AMR][1000 genomes]
rs12344691	1.00[AMR][1000 genomes]
rs12345456	1.00[AMR][1000 genomes]
rs12349955	1.00[AMR][1000 genomes]
rs12353438	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1576896	1.00[AMR][1000 genomes]
rs16936735	1.00[AMR][1000 genomes]
rs28391853	1.00[AMR][1000 genomes]
rs28408411	1.00[AMR][1000 genomes]
rs28489992	1.00[AMR][1000 genomes]
rs7020916	1.00[AMR][1000 genomes]
rs73417008	1.00[AMR][1000 genomes]
rs73418919	1.00[AMR][1000 genomes]
rs73421026	1.00[AMR][1000 genomes]
rs73429660	1.00[AMR][1000 genomes]
rs73431002	1.00[AMR][1000 genomes]
rs7859309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18436600-18439400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:18436800-18438200	Bivalent Enhancer	Fetal Muscle Leg	muscle
3	chr9:18437000-18438600	Enhancers	Placenta	Placenta
4	chr9:18437200-18438200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:18437200-18438200	Enhancers	Fetal Kidney	kidney
6	chr9:18437200-18438400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:18437400-18438200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:18437400-18438200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:18437400-18438200	Enhancers	Fetal Stomach	stomach
10	chr9:18437400-18438400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:18437400-18438400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:18437400-18439000	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr9:18437400-18439200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:18437600-18438200	Enhancers	Brain Germinal Matrix	brain
15	chr9:18437600-18438200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr9:18437600-18438400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr9:18437600-18438400	Enhancers	NHDF-Ad	bronchial
18	chr9:18437600-18438600	Flanking Active TSS	Hela-S3	cervix
19	chr9:18437600-18438800	Enhancers	Stomach Mucosa	stomach
20	chr9:18437600-18439000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:18437600-18439000	Flanking Active TSS	Liver	Liver
22	chr9:18437600-18439200	Flanking Active TSS	Osteobl	bone
23	chr9:18437600-18439400	Flanking Active TSS	HUVEC	blood vessel
24	chr9:18437800-18438200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr9:18437800-18438200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
26	chr9:18437800-18438200	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr9:18437800-18438200	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr9:18437800-18438200	Enhancers	Colonic Mucosa	Colon
29	chr9:18437800-18438200	Flanking Active TSS	Colon Smooth Muscle	Colon
30	chr9:18437800-18438200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr9:18437800-18438200	Enhancers	Esophagus	oesophagus
32	chr9:18437800-18438200	Flanking Active TSS	Fetal Lung	lung
33	chr9:18437800-18438200	Flanking Active TSS	Fetal Muscle Trunk	muscle
34	chr9:18437800-18438200	Flanking Active TSS	Left Ventricle	heart
35	chr9:18437800-18438200	Flanking Active TSS	Right Ventricle	heart
36	chr9:18437800-18438200	Flanking Active TSS	HSMMtube	muscle
37	chr9:18437800-18438200	Flanking Active TSS	NHLF	lung
38	chr9:18437800-18438400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr9:18437800-18438400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr9:18437800-18438400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
41	chr9:18437800-18438400	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr9:18437800-18438400	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr9:18437800-18438400	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr9:18437800-18438400	Active TSS	Duodenum Mucosa	Duodenum
45	chr9:18437800-18438400	Enhancers	Fetal Brain Male	brain
46	chr9:18437800-18438400	Enhancers	Gastric	stomach
47	chr9:18437800-18438400	Enhancers	Lung	lung
48	chr9:18437800-18438400	Enhancers	Pancreas	Pancrea
49	chr9:18437800-18438400	Enhancers	Placenta Amnion	Placenta Amnion
50	chr9:18437800-18438400	Enhancers	NHEK	skin

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