Variant report

Variant	rs10963889
Chromosome Location	chr9:18976046-18976047
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18975628..18978246-chr9:18981249..18983402,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10116465	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10116604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10117445	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10119748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10122564	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10811070	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10811096	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10811115	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs10963851	0.84[ASN][1000 genomes]
rs10963853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap]
rs10963856	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10963857	0.84[ASN][1000 genomes]
rs10963858	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10963860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[ASN][1000 genomes]
rs10963861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10963868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10963873	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10963880	0.84[EUR][1000 genomes]
rs10963882	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10963883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10963886	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10963888	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10963890	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10963937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11496354	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12115446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12346001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12379525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12380170	0.84[EUR][1000 genomes]
rs16937210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16937322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17236157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2039007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2039009	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28689789	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28742005	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28805064	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4478656	0.85[EUR][1000 genomes]
rs62560397	1.00[ASN][1000 genomes]
rs62560398	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62560399	0.91[EUR][1000 genomes]
rs62560432	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7031878	1.00[CHB][hapmap]
rs7031911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap]
rs7858899	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7873306	0.85[ASN][1000 genomes]
rs883440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9657571	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1022697	chr9:18951530-19010894	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18971200-18976600	Weak transcription	Right Atrium	heart
2	chr9:18971200-18979400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:18971200-18981600	Weak transcription	Gastric	stomach
4	chr9:18971400-18976400	Weak transcription	Ovary	ovary
5	chr9:18971400-18979200	Weak transcription	Right Ventricle	heart
6	chr9:18971400-18979400	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:18973200-18976400	Enhancers	Fetal Heart	heart
8	chr9:18974800-18976600	Enhancers	Fetal Lung	lung
9	chr9:18975000-18980600	Enhancers	Fetal Thymus	thymus
10	chr9:18975200-18979400	Weak transcription	Lung	lung
11	chr9:18975600-18976600	Weak transcription	Pancreas	Pancrea
12	chr9:18975800-18976200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:18975800-18976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:18975800-18976200	Enhancers	Osteobl	bone
15	chr9:18975800-18976400	Enhancers	NHDF-Ad	bronchial
16	chr9:18975800-18977400	Enhancers	Fetal Stomach	stomach
17	chr9:18976000-18976400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:18976000-18976400	Enhancers	Adipose Nuclei	Adipose
19	chr9:18976000-18976600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:18976000-18976600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:18976000-18976600	Enhancers	Fetal Kidney	kidney
22	chr9:18976000-18976600	Enhancers	Placenta Amnion	Placenta Amnion

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