Variant report

Variant	rs62560432
Chromosome Location	chr9:19012789-19012790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10119748	0.82[EUR][1000 genomes]
rs10811070	0.82[EUR][1000 genomes]
rs10811096	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10963851	0.93[AMR][1000 genomes]
rs10963868	0.85[EUR][1000 genomes]
rs10963873	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10963883	0.85[AMR][1000 genomes]
rs10963889	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10963890	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11496354	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12115446	0.82[EUR][1000 genomes]
rs16937210	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17236157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039009	0.85[EUR][1000 genomes]
rs2233800	0.85[EUR][1000 genomes]
rs28689789	0.88[EUR][1000 genomes]
rs28742005	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28805064	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3177673	0.85[EUR][1000 genomes]
rs4478656	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62560397	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62560398	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62560399	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62560442	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9657571	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv892701	chr9:18999837-19032907	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19010000-19013000	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:19012400-19013400	Enhancers	Fetal Stomach	stomach
3	chr9:19012400-19013400	Enhancers	Fetal Thymus	thymus

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