Variant report

Variant	rs10963967
Chromosome Location	chr9:19114407-19114408
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:19111300..19113114-chr9:19113556..19115992,2	K562	blood:
2	chr9:19114306..19116374-chr9:19119106..19120885,2	K562	blood:
3	chr9:19112623..19114448-chr9:19372527..19374995,2	MCF-7	breast:
4	chr9:19100757..19103077-chr9:19112817..19114511,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10511670	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs10511671	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs10811112	0.92[CHB][hapmap];0.88[YRI][hapmap];0.83[ASN][1000 genomes]
rs10963919	0.88[YRI][hapmap]
rs10963923	0.88[YRI][hapmap]
rs10963943	0.88[CHB][hapmap];0.87[YRI][hapmap]
rs10963944	0.82[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap]
rs10963953	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs10963955	0.91[CHB][hapmap];0.87[YRI][hapmap];0.83[ASN][1000 genomes]
rs10963958	0.83[ASN][1000 genomes]
rs10963962	0.92[CHB][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.83[ASN][1000 genomes]
rs10963964	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10963966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12237614	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238548	0.88[YRI][hapmap]
rs13298563	0.83[CHB][hapmap]
rs13302453	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs16937267	0.83[CHB][hapmap]
rs16937320	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs2291502	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs34187939	0.81[ASN][1000 genomes]
rs34490350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35000581	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35448309	0.84[ASN][1000 genomes]
rs35629534	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35874966	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36087651	0.83[ASN][1000 genomes]
rs3780221	0.92[CHB][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap]
rs7022748	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7026759	0.81[ASN][1000 genomes]
rs7031392	0.91[CHB][hapmap]
rs7040525	0.81[ASN][1000 genomes]
rs71508775	0.83[ASN][1000 genomes]
rs71508776	0.83[ASN][1000 genomes]
rs71508777	0.87[EUR][1000 genomes]
rs7467137	0.83[CHB][hapmap]
rs7865126	0.92[CHB][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
2	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1028623	chr9:19034742-19394712	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv540079	chr9:19034742-19394712	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv430003	chr9:19074740-19247826	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv870340	chr9:19077714-19143230	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1018947	chr9:19094894-19394712	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
9	nsv1033552	chr9:19104662-19131866	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19103400-19114600	Weak transcription	NHLF	lung
2	chr9:19103400-19114800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:19103400-19114800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:19103400-19114800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:19103400-19114800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:19103400-19114800	Weak transcription	Brain Substantia Nigra	brain
7	chr9:19103400-19114800	Weak transcription	HSMM	muscle
8	chr9:19103400-19114800	Weak transcription	NHDF-Ad	bronchial
9	chr9:19103400-19115000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:19103400-19115400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:19103400-19115600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:19103400-19115600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:19103400-19115600	Weak transcription	Fetal Lung	lung
14	chr9:19103400-19115600	Weak transcription	Ovary	ovary
15	chr9:19103400-19115800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:19103400-19115800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:19103400-19115800	Weak transcription	Gastric	stomach
18	chr9:19103400-19116000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:19103400-19116000	Weak transcription	Brain Germinal Matrix	brain
20	chr9:19103400-19116000	Weak transcription	Small Intestine	intestine
21	chr9:19103400-19116200	Weak transcription	Aorta	Aorta
22	chr9:19103400-19116200	Weak transcription	Esophagus	oesophagus
23	chr9:19103400-19120200	Weak transcription	Pancreas	Pancrea
24	chr9:19103400-19126400	Weak transcription	Fetal Brain Male	brain
25	chr9:19103600-19114600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr9:19103600-19114600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:19103600-19114600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr9:19103600-19114600	Weak transcription	Spleen	Spleen
29	chr9:19103600-19114800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:19103600-19114800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:19103600-19114800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr9:19103600-19114800	Weak transcription	Fetal Thymus	thymus
33	chr9:19103600-19115000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr9:19103600-19115000	Weak transcription	Dnd41	blood
35	chr9:19103600-19115400	Weak transcription	Fetal Brain Female	brain
36	chr9:19103600-19115600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr9:19103600-19115600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:19103600-19115600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr9:19103600-19115800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr9:19103600-19115800	Weak transcription	Psoas Muscle	Psoas
41	chr9:19103600-19115800	Weak transcription	NHEK	skin
42	chr9:19103600-19116000	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:19103600-19116200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:19103600-19116200	Weak transcription	Brain Anterior Caudate	brain
45	chr9:19103600-19118000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:19103600-19121000	Weak transcription	Right Atrium	heart
47	chr9:19103800-19114600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr9:19105000-19115400	Weak transcription	Colonic Mucosa	Colon
49	chr9:19105200-19115000	Weak transcription	Fetal Kidney	kidney
50	chr9:19105200-19115600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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