Variant report

Variant	rs10964507
Chromosome Location	chr9:2036073-2036074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:2035867..2037863-chr9:2040595..2043579,2	MCF-7	breast:
2	chr9:2027773..2030143-chr9:2034628..2037514,2	K562	blood:
3	chr9:2015330..2018297-chr9:2035684..2039047,3	MCF-7	breast:
4	chr9:2015290..2017230-chr9:2035454..2037354,2	MCF-7	breast:
5	chr9:2035810..2037705-chr9:2044015..2046964,2	K562	blood:
6	chr9:2030993..2033791-chr9:2034490..2037168,2	K562	blood:

Variant related genes	Relation type
ENSG00000080503	Chromatin interaction
ENSG00000236199	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10757122	0.83[CEU][hapmap]
rs10964457	0.84[JPT][hapmap]
rs10964458	0.84[JPT][hapmap]
rs10964466	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10964471	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs10964502	0.81[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10964504	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016148	chr9:1457605-2361750	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv539916	chr9:1457605-2361750	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1021712	chr9:1647840-2216839	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv539921	chr9:1647840-2216839	Bivalent Enhancer Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1020530	chr9:1870197-2658587	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv831493	chr9:1885733-2074135	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv892048	chr9:1888703-2177391	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1021158	chr9:1963930-2040728	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv892052	chr9:1980819-2072470	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	esv2830420	chr9:1998911-2119702	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv613079	chr9:2012767-2059341	Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv466069	chr9:2018825-2066493	Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv613080	chr9:2018825-2066493	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv466070	chr9:2024639-2044721	Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv613081	chr9:2024639-2044721	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv892053	chr9:2024639-2062014	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv466071	chr9:2028757-2065892	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv613082	chr9:2028757-2065892	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv466073	chr9:2029018-2069765	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv613083	chr9:2029018-2069765	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv466074	chr9:2032845-2074070	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv613084	chr9:2032845-2074070	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv466075	chr9:2033182-2067918	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv613085	chr9:2033182-2067918	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	nsv613086	chr9:2034666-2059341	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv613087	chr9:2034666-2065892	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2019200-2039400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:2024000-2039400	Weak transcription	Stomach Mucosa	stomach
3	chr9:2025200-2044600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:2025400-2044000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:2025600-2040000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:2025600-2041200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:2025800-2043600	Weak transcription	Fetal Heart	heart
8	chr9:2026000-2037400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:2026000-2047400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:2028000-2040000	Weak transcription	HMEC	breast
11	chr9:2029000-2125200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr9:2029200-2039600	Weak transcription	Psoas Muscle	Psoas
13	chr9:2029200-2042600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr9:2029200-2053000	Weak transcription	Small Intestine	intestine
15	chr9:2029400-2043800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr9:2029600-2051800	Strong transcription	Liver	Liver
17	chr9:2030000-2040800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:2031400-2048400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr9:2031400-2052200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr9:2031600-2039600	Strong transcription	GM12878-XiMat	blood
21	chr9:2031800-2043600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr9:2031800-2043800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr9:2032000-2044200	Strong transcription	Dnd41	blood
24	chr9:2032200-2036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:2032200-2042400	Strong transcription	Primary B cells from cord blood	blood
26	chr9:2032200-2044200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr9:2032400-2039400	Weak transcription	Right Atrium	heart
28	chr9:2032400-2040800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr9:2032400-2045000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr9:2032600-2036400	Strong transcription	Adipose Nuclei	Adipose
31	chr9:2032600-2042600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr9:2032600-2042600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:2032800-2036200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr9:2032800-2043800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr9:2033000-2038200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:2033000-2039000	Strong transcription	NHDF-Ad	bronchial
37	chr9:2033000-2043400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:2033200-2040600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:2033200-2040800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:2033200-2040800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:2033800-2039600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr9:2033800-2040000	Weak transcription	HSMM	muscle
43	chr9:2033800-2040800	Weak transcription	NHEK	skin
44	chr9:2033800-2044000	Weak transcription	Fetal Kidney	kidney
45	chr9:2034000-2039400	Weak transcription	Brain Germinal Matrix	brain
46	chr9:2034000-2039400	Weak transcription	Gastric	stomach
47	chr9:2034000-2039400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr9:2034000-2039400	Weak transcription	Right Ventricle	heart
49	chr9:2034200-2039400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:2034200-2039400	Weak transcription	Aorta	Aorta

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