Variant report

Variant	rs10964869
Chromosome Location	chr9:21160031-21160032
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10283707	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10283817	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10757193	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10757194	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10811484	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10811485	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10811495	0.92[CEU][hapmap];0.95[CHB][hapmap]
rs2019226	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2032996	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6475526	0.95[CHB][hapmap]
rs7024604	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7033782	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7037389	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[YRI][hapmap]
rs7048266	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv466293	chr9:21029330-21199680	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv613752	chr9:21029330-21199680	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1032466	chr9:21052069-21243756	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv540084	chr9:21052069-21243756	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv892735	chr9:21157373-21242161	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21154600-21160200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:21158800-21161400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr9:21159000-21161400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:21159000-21161600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:21159000-21161600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr9:21159200-21161200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr9:21159400-21160600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:21159400-21161400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:21159800-21161400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr9:21160000-21160200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr9:21160000-21160400	Flanking Active TSS	GM12878-XiMat	blood
12	chr9:21160000-21160400	Enhancers	HMEC	breast
13	chr9:21160000-21160400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr9:21160000-21160600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr9:21160000-21160600	Enhancers	HUVEC	blood vessel
16	chr9:21160000-21161000	Enhancers	Primary T cells from cord blood	blood
17	chr9:21160000-21161200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr9:21160000-21161400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr9:21160000-21161400	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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