Variant report

Variant	rs10965067
Chromosome Location	chr9:21577193-21577194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10965068	0.88[EUR][1000 genomes]
rs10965069	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10965073	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12376253	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60506615	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7026552	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703473	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72703475	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72703481	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575400-21577800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:21575600-21577200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:21575800-21577400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:21575800-21577600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:21576000-21577200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:21576000-21577200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:21576000-21577200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:21576000-21577200	Flanking Active TSS	HUVEC	blood vessel
10	chr9:21576000-21577400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:21576000-21577400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr9:21576000-21577800	Flanking Active TSS	Hela-S3	cervix
13	chr9:21576000-21578800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:21576000-21578800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr9:21576200-21577200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:21576200-21577200	Flanking Active TSS	HMEC	breast
17	chr9:21576200-21577200	Active TSS	NHLF	lung
18	chr9:21576200-21577400	Flanking Active TSS	NHEK	skin
19	chr9:21576200-21578800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr9:21576200-21578800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr9:21576400-21577200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:21576400-21577800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr9:21576400-21578000	Enhancers	GM12878-XiMat	blood
24	chr9:21576400-21578800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr9:21576600-21577600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:21576600-21577800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:21576600-21579000	Weak transcription	Stomach Mucosa	stomach
28	chr9:21576600-21579200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:21576800-21577200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:21576800-21577200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:21576800-21577200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:21576800-21577200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr9:21576800-21577200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:21576800-21577200	Flanking Active TSS	HSMMtube	muscle
35	chr9:21576800-21577200	Flanking Active TSS	NH-A	brain
36	chr9:21576800-21577200	Flanking Active TSS	Osteobl	bone
37	chr9:21576800-21578000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr9:21576800-21578800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr9:21577000-21577200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:21577000-21577200	Active TSS	A549	lung
41	chr9:21577000-21577200	Flanking Active TSS	NHDF-Ad	bronchial
42	chr9:21577000-21577800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr9:21577000-21577800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:21577000-21577800	Enhancers	HSMM	muscle
45	chr9:21577000-21578000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr9:21577000-21578200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:21577000-21578400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:21577000-21578600	Enhancers	Primary T cells from cord blood	blood
49	chr9:21577000-21578600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr9:21577000-21578800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links