Variant report

Variant	rs72703473
Chromosome Location	chr9:21571467-21571468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10965038	1.00[AFR][1000 genomes]
rs10965067	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10965068	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10965069	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10965072	1.00[AFR][1000 genomes]
rs10965073	0.97[EUR][1000 genomes]
rs12376253	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12378310	1.00[AFR][1000 genomes]
rs12378477	1.00[AFR][1000 genomes]
rs60506615	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7026552	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72703475	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72703481	0.81[EUR][1000 genomes]
rs998188	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21565600-21576000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:21568200-21576200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:21570200-21571600	Enhancers	HMEC	breast
4	chr9:21570200-21572200	Flanking Active TSS	A549	lung
5	chr9:21570200-21572200	Enhancers	Hela-S3	cervix
6	chr9:21570400-21571800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:21570400-21572800	Enhancers	NHEK	skin
8	chr9:21570600-21571800	Enhancers	NH-A	brain
9	chr9:21571000-21574200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:21571000-21575600	Weak transcription	NHDF-Ad	bronchial
11	chr9:21571200-21573200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:21571200-21575600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:21571200-21575600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:21571200-21575600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:21571200-21575600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:21571200-21575800	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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