Variant report

Variant	rs10965252
Chromosome Location	chr9:22135919-22135920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:21802572..21804265-chr9:22133803..22136293,3	MCF-7	breast:
2	chr9:22133614..22136264-chr9:22136467..22138356,2	MCF-7	breast:
3	chr9:22105576..22108969-chr9:22134312..22138270,4	MCF-7	breast:
4	chr9:22004432..22007311-chr9:22132091..22136964,5	MCF-7	breast:
5	chr9:22133587..22139389-chr9:22236165..22240719,9	MCF-7	breast:
6	chr9:22117118..22121296-chr9:22132550..22137842,5	MCF-7	breast:
7	chr9:21994827..21996468-chr9:22135173..22136965,2	MCF-7	breast:
8	chr9:22085206..22088406-chr9:22135474..22138114,4	MCF-7	breast:
9	chr9:22003756..22006573-chr9:22135185..22137660,2	MCF-7	breast:
10	chr9:22134724..22142146-chr9:22236106..22241744,12	MCF-7	breast:
11	chr9:22134738..22136588-chr9:22241376..22243783,2	MCF-7	breast:
12	chr9:22134290..22136074-chr9:22199654..22202617,2	MCF-7	breast:
13	chr9:22110189..22115240-chr9:22131461..22136615,6	MCF-7	breast:
14	chr9:22118293..22119936-chr9:22134631..22137538,2	MCF-7	breast:
15	chr9:22102619..22105197-chr9:22133745..22136663,3	MCF-7	breast:
16	chr9:22134989..22139400-chr9:22207897..22213962,14	MCF-7	breast:
17	chr9:22131104..22132900-chr9:22134723..22136356,2	MCF-7	breast:
18	chr9:22106401..22111630-chr9:22133940..22138604,9	MCF-7	breast:
19	chr9:22080679..22082945-chr9:22134850..22136541,2	MCF-7	breast:
20	chr9:22103684..22105662-chr9:22133827..22136503,2	MCF-7	breast:
21	chr9:22131413..22138789-chr9:22206819..22215785,18	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000099810	Chromatin interaction
ENSG00000147883	Chromatin interaction
ENSG00000147889	Chromatin interaction
ENSG00000266446	Chromatin interaction
ENSG00000240498	Chromatin interaction
ENSG00000264545	Chromatin interaction
ENSG00000236921	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10965249	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10965251	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10965253	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1575974	1.00[JPT][hapmap]
rs3731249	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1029889	chr9:22118046-22161828	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv892749	chr9:22125913-22244280	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22130600-22136400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:22132400-22140800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:22133600-22137200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:22134000-22137800	Enhancers	HMEC	breast
5	chr9:22134400-22137600	Enhancers	NHEK	skin
6	chr9:22134600-22137200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:22135000-22137000	Genic enhancers	A549	lung
8	chr9:22135000-22137800	Enhancers	NH-A	brain
9	chr9:22135200-22137800	Enhancers	HSMM	muscle
10	chr9:22135200-22138400	Enhancers	HSMMtube	muscle
11	chr9:22135400-22136800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:22135600-22137400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:22135600-22138400	Enhancers	Hela-S3	cervix
14	chr9:22135600-22141600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:22135800-22137600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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