Variant report

Variant	rs10965249
Chromosome Location	chr9:22133131-22133132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22116649..22120343-chr9:22129230..22133367,5	MCF-7	breast:
2	chr9:22004432..22007311-chr9:22132091..22136964,5	MCF-7	breast:
3	chr9:22117118..22121296-chr9:22132550..22137842,5	MCF-7	breast:
4	chr9:22084266..22085996-chr9:22132366..22134848,2	MCF-7	breast:
5	chr9:22132234..22134475-chr9:22237338..22238952,2	MCF-7	breast:
6	chr9:22110189..22115240-chr9:22131461..22136615,6	MCF-7	breast:
7	chr9:22123237..22127319-chr9:22132072..22135694,5	MCF-7	breast:
8	chr9:22131413..22138789-chr9:22206819..22215785,18	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10965239	1.00[EUR][1000 genomes]
rs10965251	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10965252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10965253	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1575974	1.00[JPT][hapmap]
rs3731249	1.00[CHB][hapmap]
rs72655467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1029889	chr9:22118046-22161828	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv892749	chr9:22125913-22244280	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22129600-22134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:22129800-22133600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:22130200-22134000	Weak transcription	HMEC	breast
4	chr9:22130200-22134400	Weak transcription	NHEK	skin
5	chr9:22130400-22135000	Weak transcription	NH-A	brain
6	chr9:22130600-22134000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:22130600-22135600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:22130600-22135600	Weak transcription	Hela-S3	cervix
9	chr9:22130600-22136400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:22130800-22135200	Weak transcription	HSMMtube	muscle
11	chr9:22131000-22133400	Weak transcription	A549	lung
12	chr9:22132400-22140800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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