Variant report

Variant	rs72655467
Chromosome Location	chr9:22139484-22139485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:22134724..22142146-chr9:22236106..22241744,12	MCF-7	breast:
2	chr9:22102592..22104298-chr9:22138020..22139528,2	MCF-7	breast:
3	chr9:22137856..22139797-chr9:22230437..22233157,2	MCF-7	breast:
4	chr9:22137683..22139589-chr9:22148553..22150930,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10965239	1.00[EUR][1000 genomes]
rs10965249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10965253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1029889	chr9:22118046-22161828	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv892749	chr9:22125913-22244280	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22132400-22140800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:22135600-22141600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:22137000-22141600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:22137200-22142000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:22137200-22142000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:22137200-22142800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:22137200-22144400	Weak transcription	NHDF-Ad	bronchial
8	chr9:22137400-22141000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:22137400-22141400	Weak transcription	Osteobl	bone
10	chr9:22137400-22141600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:22137400-22142000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:22137600-22141600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:22137600-22142000	Weak transcription	NHEK	skin
14	chr9:22137800-22141000	Weak transcription	NH-A	brain
15	chr9:22137800-22141400	Weak transcription	HMEC	breast
16	chr9:22137800-22142000	Weak transcription	HSMM	muscle
17	chr9:22138400-22140800	Weak transcription	Hela-S3	cervix
18	chr9:22138400-22147600	Weak transcription	HSMMtube	muscle
19	chr9:22139200-22140800	Weak transcription	A549	lung
20	chr9:22139400-22141600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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