Variant report

Variant	rs10967548
Chromosome Location	chr9:26822720-26822721
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10738762	0.84[CEU][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs10757635	0.84[CEU][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs10757636	0.83[EUR][1000 genomes]
rs10812479	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10812482	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10812487	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10812488	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10812503	0.89[MEX][hapmap]
rs10812507	0.81[CEU][hapmap]
rs10967549	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10967551	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10967556	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10967652	0.81[CEU][hapmap]
rs12337896	0.89[MEX][hapmap]
rs12342005	0.89[CEU][hapmap]
rs1541144	0.81[CEU][hapmap]
rs3758218	0.83[MEX][hapmap]
rs4413873	0.81[CEU][hapmap]
rs59159685	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62544398	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6475944	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6475945	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6475946	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6475947	0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7018585	0.81[CEU][hapmap]
rs7032756	0.82[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.84[LWK][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7033238	0.94[EUR][1000 genomes]
rs7034670	0.90[EUR][1000 genomes]
rs7035292	0.83[EUR][1000 genomes]
rs7038218	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7042133	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7042447	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7856462	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7857481	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7860542	0.93[CEU][hapmap]
rs7863476	0.89[CEU][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7868158	0.94[CEU][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7872496	0.84[CEU][hapmap]
rs7875068	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10967548	IFT74	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26822600-26846200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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