Variant report

Variant	rs7857481
Chromosome Location	chr9:26829823-26829824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10738762	0.83[EUR][1000 genomes]
rs10757635	0.83[EUR][1000 genomes]
rs10757636	0.83[EUR][1000 genomes]
rs10812479	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10812482	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10812487	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10812488	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10967548	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10967549	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10967551	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10967556	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59159685	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62544398	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6475944	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6475945	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6475946	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6475947	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7032756	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7033238	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7034670	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7035292	0.83[EUR][1000 genomes]
rs7038218	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7042133	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7042447	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7856462	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7863476	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7868158	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3373096	chr9:26825001-26848031	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7857481	IFT74	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26822600-26846200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:26829000-26833400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:26829000-26839400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:26829000-26839600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:26829000-26840200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:26829000-26840400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:26829200-26842200	Weak transcription	Left Ventricle	heart

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